Marina V. Bibikova: search on Z-Library

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1

Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates

Hannum, Gregory, Guinney, Justin, Zhao, Ling, Zhang, Li, Hughes, Guy, Sadda, SriniVas, Klotzle, Brandy, Bibikova, Marina, Fan, Jian-Bing, Gao, Yuan, Deconde, Rob, Chen, Menzies, Rajapakse, Indika, Fri

Journal:

Year:

2013

Language:

english

File:

PDF, 1.10 MB

english, 2013

2

Unraveling Epigenetic Regulation in Embryonic Stem Cells

Marina Bibikova, Louise C. Laurent, Bing Ren, Jeanne F. Loring, Jian-Bing Fan

Journal:

Year:

2008

Language:

english

File:

PDF, 1.01 MB

english, 2008

3

Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases

Bibikova, Marina, Golic, Mary, Golic, Kent G., Carroll, Dana

Journal:

Year:

2002

Language:

english

File:

PDF, 163 KB

english, 2002

4

Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome

Sandoval, Juan, Heyn, Holger, Moran, Sebastian, Serra-Musach, Jordi, Pujana, Miguel A., Bibikova, Marina, Esteller, Manel

Journal:

Year:

2011

Language:

english

File:

PDF, 9.06 MB

english, 2011

5

Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression

Serre, David, Gurd, Scott, Ge, Bing, Sladek, Robert, Sinnett, Donna, Harmsen, Eef, Bibikova, Marina, Chudin, Eugene, Barker, David L., Dickinson, Todd, Fan, Jian-Bing, Hudson, Thomas J., Dermitzakis,

Journal:

Year:

2008

Language:

english

File:

PDF, 467 KB

english, 2008

6

High-throughput SNP genotyping on universal bead arrays

Richard Shen, Jian-Bing Fan, Derek Campbell, Weihua Chang, Jing Chen, Dennis Doucet, Jo Yeakley, Marina Bibikova, Eliza Wickham Garcia, Celeste McBride, Frank Steemers, Francisco Garcia, Bahram G. Ker

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2005

Language:

english

File:

PDF, 468 KB

english, 2005

7

Microarray-based DNA methylation analysis of imprinted loci in a patient with transient neonatal diabetes mellitus

Jose I. Martin-Subero, Marina Bibikova, Deborah Mackay, Eliza Wickham-Garcia, Nadia Sellami, Julia Richter, Rene Santer, Almuth Caliebe, Jian-Bing Fan, I. Karen Temple, Reiner Siebert

Journal:

American Journal of Medical Genetics Part A

Year:

2008

Language:

english

File:

PDF, 153 KB

english, 2008

8

Expression signatures that correlated with Gleason score and relapse in prostate cancer

Marina Bibikova, Eugene Chudin, Amir Arsanjani, Lixin Zhou, Eliza Wickham Garcia, Joshua Modder, Monica Kostelec, David Barker, Tracy Downs, Jian-Bing Fan, Jessica Wang-Rodriguez

Journal:

Year:

2007

Language:

english

File:

PDF, 232 KB

english, 2007

9

Gene expression panel predicts metastatic-lethal prostate cancer outcomes in men diagnosed with clinically localized prostate cancer

Rubicz, Rohina, Zhao, Shanshan, Wright, Jonathan L., Coleman, Ilsa, Grasso, Catherine, Geybels, Milan S., Leonardson, Amy, Kolb, Suzanne, April, Craig, Bibikova, Marina, Troyer, Dean, Lance, Raymond,

Journal:

Molecular Oncology

Year:

2017

Language:

english

File:

PDF, 386 KB

english, 2017

10

Allele-specific expression in the germline of patients with familial pancreatic cancer: An unbiased approach to cancer gene discovery

Tan, Aik Choon, Fan, Jian-Bing, Karikari, Collins, Bibikova, Marina, Wickham Garcia, Eliza, Zhou, Lixin, Barker, David, Serre, David, Feldmann, Georg, Hruban, Ralph H., Klein, Alison P., Goggins, Mich

Journal:

Cancer Biology & Therapy

Year:

2008

Language:

english

File:

PDF, 945 KB

english, 2008

11

A Panel of CpG Methylation Sites Distinguishes Human Embryonic Stem Cells and Induced Pluripotent Stem Cells

Huang, Kevin, Shen, Yin, Xue, Zhigang, Bibikova, Marina, April, Craig, Liu, Zhenshan, Cheng, Linzhao, Nagy, Andras, Pellegrini, Matteo, Fan, Jian-Bing, Fan, Guoping

Journal:

Stem Cell Reports

Year:

2014

Language:

english

File:

PDF, 1.62 MB

english, 2014

12

DNA methylation markers of surfactant proteins in lung cancer

Lin, Zhenwu, Thomas, Neal, Bibikova, Marina, Seifart, Carola, Wang, Yunhua, Guo, Xiaoxuan, Wang, Guirong, Vollmer, Ekkehard, Goldmann, Torsten, Garcia, Eliza, Zhou, Lixin, Fan, Jian-Bing, Floros, Joan

Journal:

International Journal of Oncology

Year:

2007

Language:

english

File:

PDF, 291 KB

english, 2007

13

Substantial DNA methylation differences between two major neuronal subtypes in human brain

Kozlenkov, Alexey, Wang, Minghui, Roussos, Panos, Rudchenko, Sergei, Barbu, Mihaela, Bibikova, Marina, Klotzle, Brandy, Dwork, Andrew J., Zhang, Bin, Hurd, Yasmin L., Koonin, Eugene V., Wegner, Michae

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 6.68 MB

english, 2016

14

Gene expression signature of Gleason score is associated with prostate cancer outcomes in a radical prostatectomy cohort

Jhun, Mina A., Geybels, Milan S., Wright, Jonathan L., Kolb, Suzanne, April, Craig, Bibikova, Marina, Ostrander, Elaine A., Fan, Jian-Bing, Feng, Ziding, Stanford, Janet L.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.45 MB

english, 2017

15

Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy

Geybels, Milan S., Wright, Jonathan L., Bibikova, Marina, Klotzle, Brandy, Fan, Jian-Bing, Zhao, Shanshan, Feng, Ziding, Ostrander, Elaine A., Lin, Daniel W., Nelson, Peter S., Stanford, Janet L.

Journal:

Clinical Epigenetics

Year:

2016

Language:

english

File:

PDF, 1.43 MB

english, 2016

16

Prostate tumor DNA methylation is associated with cigarette smoking and adverse prostate cancer outcomes

Shui, Irene M., Wong, Chao-Jen, Zhao, Shanshan, Kolb, Suzanne, Ebot, Ericka M., Geybels, Milan S., Rubicz, Rohina, Wright, Jonathan L., Lin, Daniel W., Klotzle, Brandy, Bibikova, Marina, Fan, Jian-Bin

Journal:

Year:

2016

Language:

english

File:

PDF, 318 KB

english, 2016

17

Epigenomic profiling of prostate cancer identifies differentially methylated genes inTMPRSS2:ERGfusion-positive versus fusion-negative tumors

Geybels, Milan S., Alumkal, Joshi J., Luedeke, Manuel, Rinckleb, Antje, Zhao, Shanshan, Shui, Irene M., Bibikova, Marina, Klotzle, Brandy, van den Brandt, Piet A., Ostrander, Elaine A., Fan, Jian-Bing

Journal:

Clinical Epigenetics

Year:

2015

Language:

english

File:

PDF, 2.17 MB

english, 2015

18

Mre11 Protein Complex Prevents Double-Strand Break Accumulation during Chromosomal DNA Replication

Vincenzo Costanzo, Kirsten Robertson, Marina Bibikova, Edward Kim, Domenico Grieco, Max Gottesman, Dana Carroll, Jean Gautier

Journal:

Year:

2001

Language:

english

File:

PDF, 373 KB

english, 2001

19

DNA methylation profiles in African American prostate cancer patients in relation to disease progression

Rubicz, Rohina, Zhao, Shanshan, Geybels, Milan, Wright, Jonathan L., Kolb, Suzanne, Klotzle, Brandy, Bibikova, Marina, Troyer, Dean, Lance, Raymond, Ostrander, Elaine A., Feng, Ziding, Fan, Jian-Bing,

Journal:

Year:

2016

Language:

english

File:

PDF, 609 KB

english, 2016

20

A Comprehensive Microarray-Based DNA Methylation Study of 367 Hematological Neoplasms

Martin-Subero, Jose I., Ammerpohl, Ole, Bibikova, Marina, Wickham-Garcia, Eliza, Agirre, Xabier, Alvarez, Sara, Brüggemann, Monika, Bug, Stefanie, Calasanz, Maria J., Deckert, Martina, Dreyling, Marti

Journal:

Year:

2009

Language:

english

File:

PDF, 870 KB

english, 2009

21

Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics

Munchel, Sarah, Hoang, Yen, Zhao, Yue, Cottrell, Joseph, Klotzle, Brandy, Godwin, Andrew K., Koestler, Devin, Beyerlein, Peter, Fan, Jian-Bing, Bibikova, Marina, Chien, Jeremy

Journal:

Year:

2015

Language:

english

File:

PDF, 6.71 MB

english, 2015

22

PTEN loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles

Geybels, Milan S., Fang, Min, Wright, Jonathan L., Qu, Xiaoyu, Bibikova, Marina, Klotzle, Brandy, Fan, Jian-Bing, Feng, Ziding, Ostrander, Elaine A., Nelson, Peter S., Stanford, Janet L.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.05 MB

english, 2017

23

Reduction and protonation of the secondary quinone acceptor of Rhodobacter sphaeroides photosynthetic reaction center: kinetic model based on a comparison of wild-type chromatophores with mutants carrying Arg→Ile substitution at sites 207 and 217 in the L-subunit

Dmitry A. Cherepanov, Sergei I. Bibikov, Marina V. Bibikova, Dmitry A. Bloch, Lel A. Drachev, Oksana A. Gopta, Dieter Oesterhelt, Alexey Y. Semenov, Armen Y. Mulkidjanian

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2000

Language:

english

File:

PDF, 636 KB

english, 2000

24

Application of a low cost array-based technique — TAB-Array — for quantifying and mapping both 5mC and 5hmC at single base resolution in human pluripotent stem cells

Nazor, Kristopher L., Boland, Michael J., Bibikova, Marina, Klotzle, Brandy, Yu, Miao, Glenn-Pratola, Victoria L., Schell, John P., Coleman, Ronald L., Cabral-da-Silva, Mauricio C., Schmidt, Ulrich, P

Journal:

Year:

2014

Language:

english

File:

PDF, 3.86 MB

english, 2014

25

Epigenomics in Health and Disease || DNA Methylation Microarrays

Bibikova, Marina

Year:

2016

Language:

english

File:

PDF, 537 KB

english, 2016

26

Epigenomic profiling of DNA methylation in paired prostate cancer versus adjacent benign tissue

Geybels, Milan S., Zhao, Shanshan, Wong, Chao-Jen, Bibikova, Marina, Klotzle, Brandy, Wu, Michael, Ostrander, Elaine A., Fan, Jian-Bing, Feng, Ziding, Stanford, Janet L.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

27

Genomic profiling of 766 cancer-related genes in archived esophageal normal and carcinoma tissues

Jing Chen, Liping Guo, Daniel A. Peiffer, Lixin Zhou, Owen Tsan Mo Chan, Marina Bibikova, Eliza Wickham-Garcia, Shih-Hsin Lu, Qimin Zhan, Jessica Wang-Rodriguez, Wei Jiang, Jian-Bing Fan

Journal:

International Journal of Cancer

Year:

2008

Language:

english

File:

PDF, 345 KB

english, 2008

28

Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia

Kulis, Marta, Heath, Simon, Bibikova, Marina, Queirós, Ana C, Navarro, Alba, Clot, Guillem, Martínez-Trillos, Alejandra, Castellano, Giancarlo, Brun-Heath, Isabelle, Pinyol, Magda, Barberán-Soler, Ser

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 2.11 MB

english, 2012

29

Genome-wide DNA methylation profiling using Infinium ® assay

Bibikova, Marina, Le, Jennie, Barnes, Bret, Saedinia-Melnyk, Shadi, Zhou, Lixin, Shen, Richard, Gunderson, Kevin L

Journal:

Year:

2009

Language:

english

File:

PDF, 1.22 MB

english, 2009

30

Identification and functional relevance of de novo DNA methylation in cancerous B-cell populations

Xiao-Ming Wang, Timothy C. Greiner, Marina Bibikova, Brian L. Pike, Kimberly D. Siegmund, Uttam K. Sinha, Markus Müschen, Erich B. Jaeger, Dennis D. Weisenburger, Wing C. Chan, Darryl Shibata, Jian-Bi

Journal:

Journal of Cellular Biochemistry

Year:

2010

Language:

english

File:

PDF, 331 KB

english, 2010

31

Array-based DNA methylation profiling of primary lymphomas of the central nervous system

Julia Richter, Ole Ammerpohl, José I Martín-Subero, Manuel Montesinos-Rongen, Marina Bibikova, Eliza Wickham-Garcia, Otmar D Wiestler, Martina Deckert, Reiner Siebert

Journal:

Year:

2009

Language:

english

File:

PDF, 380 KB

english, 2009

32

Genome-wide DNA methylation profiling

Marina Bibikova, Jian-Bing Fan

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2010

Language:

english

File:

PDF, 223 KB

english, 2010

33

Conformational Heterogeneity of the Bacteriopheophytin Electron Acceptor HA in Reaction Centers from Rhodopseudomonas viridis Revealed by Fourier Transform Infrared Spectroscopy and Site-Directed Mutagenesis

Breton, Jacques, Bibikova, Marina, Oesterhelt, Dieter, Nabedryk, Eliane

Journal:

Year:

1999

Language:

english

File:

PDF, 203 KB

english, 1999

34

A Methyl-Deviator Epigenotype of Estrogen Receptor–Positive Breast Carcinoma Is Associated with Malignant Biology

J.. Keith Killian, Sven Bilke, Sean Davis, Robert L. Walker, Erich Jaeger, M. Scott Killian, Joshua J. Waterfall, Marina Bibikova, Jian-Bing Fan, William I. Smith Jr, Paul S. Meltzer

Journal:

The American Journal of Pathology

Year:

2011

Language:

english

File:

PDF, 2.53 MB

english, 2011

35

High density DNA methylation array with single CpG site resolution

Marina Bibikova, Bret Barnes, Chan Tsan, Vincent Ho, Brandy Klotzle, Jennie M. Le, David Delano, Lu Zhang, Gary P. Schroth, Kevin L. Gunderson, Jian-Bing Fan, Richard Shen

Journal:

Year:

2011

Language:

english

File:

PDF, 913 KB

english, 2011

36

Pisces: An Accurate and Versatile Variant Caller for Somatic and Germline Next-Generation Sequencing Data

Dunn, Tamsen, Berry, Gwenn, Emig-Agius, Dorothea, Jiang, Yu, Lei, Serena, Iyer, Anita, Udar, Nitin, Chuang, Han-Yu, Hegarty, Jeff, Dickover, Michael, Klotzle, Brandy, Robbins, Justin, Bibikova, Marina

Journal:

Year:

2018

Language:

english

File:

PDF, 212 KB

english, 2018

37

Quantitative Gene Expression Profiling in Formalin-Fixed, Paraffin-Embedded Tissues Using Universal Bead Arrays

Marina Bibikova, Dimitri Talantov, Eugene Chudin, Joanne M. Yeakley, Jing Chen, Dennis Doucet, Eliza Wickham, David Atkins, David Barker, Mark Chee, Yixin Wang, Jian-Bing Fan

Journal:

The American Journal of Pathology

Year:

2004

Language:

english

File:

PDF, 353 KB

english, 2004

38

Human Stem Cell Manual || Epigenetics

Bibikova, Marina

Year:

2012

Language:

english

File:

PDF, 1.69 MB

english, 2012

39

DNA methylation fingerprint of neuroblastoma reveals new biological and clinical insights

Gómez, Soledad, Castellano, Giancarlo, Mayol, Gemma, Suñol, Mariona, Queiros, Ana, Bibikova, Marina, Nazor, Kristopher L, Loring, Jeanne F, Lemos, Isadora, Rodríguez, Eva, de Torres, Carmen, Mora, Jau

Journal:

Year:

2015

Language:

english

File:

PDF, 2.60 MB

english, 2015

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